| Auberge Du Herisson Hotel Besancon | 2.0 star rating | 16 | Lons Le Saunier |
| Balladins Besancon Hotel | Pending Category | 28 | Besancon |
 | BEST WESTERN Citadelle Besancon Hotel | 3.0 star rating | | Besancon |
 | Campanile Besançon Nord Ecole Valentin Hotel Besancon | 2.0 star rating | 53 | Besancon |
| Campanile BESANCON OUEST - Chateaufarine Hotel Besancon | 3.0 star rating | 44 | Besancon |
 | Campanile PONTARLIER Hotel Besancon | 3.0 star rating | 46 | Pontarlier |
 | Chateau De La Dame Blanche Hotel Besancon | 3.0 star rating | 26 | Besancon |
| Chateau De Rigny Hotel Besancon | 3.0 star rating | | Gray |
 | Citea Besancon La City Hotel | 2.0 star rating | 114 | Besancon |
 | De La Tour Hotel Besancon | 3.0 star rating | 25 | Gray |
 | Domaine Du Revermont Hotel Besancon | 3.0 star rating | 28 | Lons Le Saunier |
 | Florel Hotel Besancon | 3.0 star rating | 53 | Besancon |
| Golf Hotel Resort Du Val De Sorne Besancon | 3.0 star rating | 35 | Lons Le Saunier |
| Grand Hotel Des Bains Besancon | 3.0 star rating | | Arbois |
| Hostellerie Des Monts Jura Hotel Besancon | 2.0 star rating | 9 | Lons Le Saunier |
| Hotel Au Moulin Des Truites Bleues Besancon | 3.0 star rating | 17 | Lons Le Saunier |
| Hotel Au Terminus Besancon | 2.0 star rating | 18 | Lons Le Saunier |
| Hotel Des 3 Iles Besancon | 2.0 star rating | 17 | Besancon |
| Hotel Des Cepages Besancon | 3.0 star rating | 33 | Arbois |
| HotelF1 Besançon Micropolis Besancon | 3.0 star rating | 72 | Besancon |
| HotelF1 Besançon Valentin - Espace Valentin centre Besancon | 3.0 star rating | 73 | Besancon |
| Hotel La Fontaine Besancon | 2.0 star rating | 19 | Lons Le Saunier |
| Hotel La Truite D'Or Besancon | 2.0 star rating | | Pontarlier |
 | Hotel Vesontio Besancon | 3.0 star rating | 36 | Besancon |
 | ibis Besançon Centre Ville Hotel Besancon | 4.0 star rating | 49 | Besancon |
| ibis Besancon la City Hotel | 4.0 star rating | 119 | Besancon |
 | ibis budget Besançon Centre Gare Hotel Besancon | 4.0 star rating | | Besancon |
 | Ibis Styles Besancon Hotel | 3.0 star rating | 107 | Besancon |
| Inter-Hotel Du Beryl Besancon | 3.0 star rating | 40 | Lons Le Saunier |
| Kyriad Hotel Besançon Ecole Valentin Besancon | 3.0 star rating | 44 | Besancon |
| La Table De Gustave Hotel Besancon | 3.0 star rating | 28 | Ornans |
 | Mercure Besancon Parc Micaud Hotel | 3.0 star rating | 91 | Besancon |
| Premiere Classe Besancon - Ecole Valentin Hotel | 3.0 star rating | 75 | Besancon |
 | Zenitude La City Hotel Besancon | 2.0 star rating | 112 | Besancon |
 | Zenitude Les Hauts du Chazal Hotel Besancon | Aparthotel 3* | 100 | Besancon |